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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 250 57

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 53 5

  3. MAxO MAxO Public

    Medical action ontology

    HTML 55 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 17 3

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 24 7

Repositories

Showing 10 of 253 repositories
  • zfin-genotype-to-phenotype-ingest Public
    monarch-initiative/zfin-genotype-to-phenotype-ingest’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 30, 2025
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 250 CC-BY-4.0 57 408 (2 issues need help) 53 Updated Apr 29, 2025
  • phenol Public

    phenol: Phenotype ontology library

    monarch-initiative/phenol’s past year of commit activity
    Java 23 BSD-3-Clause 4 7 1 Updated Apr 29, 2025
  • aurelian Public

    A motley crew of agents developed by the Monarch Initiative

    monarch-initiative/aurelian’s past year of commit activity
    Python 12 MIT 2 19 1 Updated Apr 29, 2025
  • emods Public

    Monarch and Linda Crrnic Center project on phenotype identification

    monarch-initiative/emods’s past year of commit activity
    Jupyter Notebook 0 MIT 0 1 0 Updated Apr 28, 2025
  • ontogpt Public

    LLM-based ontological extraction tools, including SPIRES

    monarch-initiative/ontogpt’s past year of commit activity
    Jupyter Notebook 673 BSD-3-Clause 92 66 10 Updated Apr 28, 2025
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Jupyter Notebook 7 3 68 4 Updated Apr 27, 2025
  • upheno-cross-species-ingest Public
    monarch-initiative/upheno-cross-species-ingest’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Apr 27, 2025
  • medgen Public

    MedGen ingest.

    monarch-initiative/medgen’s past year of commit activity
    Python 1 0 9 0 Updated Apr 27, 2025
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 7 3 243 (1 issue needs help) 7 Updated Apr 26, 2025
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