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run_classifier.py
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# coding=utf-8
# Copyright (c) 2019 NVIDIA CORPORATION. All rights reserved.
# Copyright 2018 The Google AI Language Team Authors.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""BERT finetuning runner."""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import collections
import csv
import os
import modeling
import optimization
import tokenization
import tensorflow as tf
import horovod.tensorflow as hvd
import time
from utils.utils import LogEvalRunHook, LogTrainRunHook, setup_xla_flags
from utils.gpu_affinity import set_affinity
import utils.dllogger_class
from dllogger import Verbosity
from utils.create_glue_data import *
import numpy as np
import tf_metrics
flags = tf.flags
FLAGS = flags.FLAGS
## Required parameters
flags.DEFINE_string(
"data_dir", None,
"The input data dir. Should contain the .tsv files (or other data files) "
"for the task.")
flags.DEFINE_string(
"bert_config_file", None,
"The config json file corresponding to the pre-trained BERT model. "
"This specifies the model architecture.")
flags.DEFINE_string("task_name", None, "The name of the task to train.")
flags.DEFINE_string("vocab_file", None,
"The vocabulary file that the BERT model was trained on.")
flags.DEFINE_string(
"output_dir", None,
"The output directory where the model checkpoints will be written.")
## Other parameters
flags.DEFINE_string(
"dllog_path", "/results/bert_dllog.json",
"filename where dllogger writes to")
flags.DEFINE_string(
"optimizer_type", "lamb",
"Optimizer type : adam or lamb")
flags.DEFINE_string(
"init_checkpoint", None,
"Initial checkpoint (usually from a pre-trained BERT model).")
flags.DEFINE_bool(
"do_lower_case", True,
"Whether to lower case the input text. Should be True for uncased "
"models and False for cased models.")
flags.DEFINE_integer(
"max_seq_length", 128,
"The maximum total input sequence length after WordPiece tokenization. "
"Sequences longer than this will be truncated, and sequences shorter "
"than this will be padded.")
flags.DEFINE_bool("do_train", False, "Whether to run training.")
flags.DEFINE_bool("do_eval", False, "Whether to run eval on the dev set.")
flags.DEFINE_bool(
"do_predict", False,
"Whether to run the model in inference mode on the test set.")
flags.DEFINE_integer("train_batch_size", 32, "Total batch size for training.")
flags.DEFINE_integer("eval_batch_size", 8, "Total batch size for eval.")
flags.DEFINE_integer("predict_batch_size", 8, "Total batch size for predict.")
flags.DEFINE_float("learning_rate", 5e-5, "The initial learning rate for Adam.")
flags.DEFINE_bool("use_trt", False, "Whether to use TF-TRT")
flags.DEFINE_float("num_train_epochs", 3.0,
"Total number of training epochs to perform.")
flags.DEFINE_float(
"warmup_proportion", 0.1,
"Proportion of training to perform linear learning rate warmup for. "
"E.g., 0.1 = 10% of training.")
flags.DEFINE_integer("save_checkpoints_steps", 1000,
"How often to save the model checkpoint.")
flags.DEFINE_integer("display_loss_steps", 10,
"How often to print loss from estimator")
flags.DEFINE_integer("iterations_per_loop", 1000,
"How many steps to make in each estimator call.")
flags.DEFINE_integer("num_accumulation_steps", 1,
"Number of accumulation steps before gradient update"
"Global batch size = num_accumulation_steps * train_batch_size")
flags.DEFINE_bool("amp", True, "Whether to enable AMP ops. When false, uses TF32 on A100 and FP32 on V100 GPUS.")
flags.DEFINE_bool("use_xla", True, "Whether to enable XLA JIT compilation.")
flags.DEFINE_bool("horovod", False, "Whether to use Horovod for multi-gpu runs")
flags.DEFINE_bool(
"verbose_logging", False,
"If true, all of the warnings related to data processing will be printed. "
"A number of warnings are expected for a normal SQuAD evaluation.")
def file_based_input_fn_builder(input_file, batch_size, seq_length, is_training,
drop_remainder, hvd=None):
"""Creates an `input_fn` closure to be passed to Estimator."""
name_to_features = {
"input_ids": tf.io.FixedLenFeature([seq_length], tf.int64),
"input_mask": tf.io.FixedLenFeature([seq_length], tf.int64),
"segment_ids": tf.io.FixedLenFeature([seq_length], tf.int64),
"label_ids": tf.io.FixedLenFeature([], tf.int64),
}
def _decode_record(record, name_to_features):
"""Decodes a record to a TensorFlow example."""
example = tf.parse_single_example(record, name_to_features)
# tf.Example only supports tf.int64, but the TPU only supports tf.int32.
# So cast all int64 to int32.
for name in list(example.keys()):
t = example[name]
if t.dtype == tf.int64:
t = tf.to_int32(t)
example[name] = t
return example
def input_fn():
"""The actual input function."""
# For training, we want a lot of parallel reading and shuffling.
# For eval, we want no shuffling and parallel reading doesn't matter.
d = tf.data.TFRecordDataset(input_file)
if is_training:
if hvd is not None: d = d.shard(hvd.size(), hvd.rank())
d = d.repeat()
d = d.shuffle(buffer_size=100)
d = d.apply(
tf.contrib.data.map_and_batch(
lambda record: _decode_record(record, name_to_features),
batch_size=batch_size,
drop_remainder=drop_remainder))
return d
return input_fn
def create_model(bert_config, is_training, input_ids, input_mask, segment_ids,
labels, num_labels, use_one_hot_embeddings):
"""Creates a classification model."""
model = modeling.BertModel(
config=bert_config,
is_training=is_training,
input_ids=input_ids,
input_mask=input_mask,
token_type_ids=segment_ids,
use_one_hot_embeddings=use_one_hot_embeddings,
compute_type=tf.float32)
# In the demo, we are doing a simple classification task on the entire
# segment.
#
# If you want to use the token-level output, use model.get_sequence_output()
# instead.
output_layer = model.get_pooled_output()
hidden_size = output_layer.shape[-1].value
output_weights = tf.get_variable(
"output_weights", [num_labels, hidden_size],
initializer=tf.truncated_normal_initializer(stddev=0.02))
output_bias = tf.get_variable(
"output_bias", [num_labels], initializer=tf.zeros_initializer())
with tf.variable_scope("loss"):
if is_training:
# I.e., 0.1 dropout
output_layer = tf.nn.dropout(output_layer, keep_prob=0.9)
logits = tf.matmul(output_layer, output_weights, transpose_b=True)
logits = tf.nn.bias_add(logits, output_bias, name='cls_logits')
probabilities = tf.nn.softmax(logits, axis=-1, name='cls_probabilities')
log_probs = tf.nn.log_softmax(logits, axis=-1)
one_hot_labels = tf.one_hot(labels, depth=num_labels, dtype=tf.float32)
per_example_loss = -tf.reduce_sum(one_hot_labels * log_probs, axis=-1, name='cls_per_example_loss')
loss = tf.reduce_mean(per_example_loss, name='cls_loss')
return (loss, per_example_loss, logits, probabilities)
def get_frozen_tftrt_model(bert_config, shape, num_labels, use_one_hot_embeddings, init_checkpoint):
tf_config = tf.compat.v1.ConfigProto()
tf_config.gpu_options.allow_growth = True
output_node_names = ['loss/cls_loss', 'loss/cls_per_example_loss', 'loss/cls_logits', 'loss/cls_probabilities']
with tf.Session(config=tf_config) as tf_sess:
input_ids = tf.placeholder(tf.int32, shape, 'input_ids')
input_mask = tf.placeholder(tf.int32, shape, 'input_mask')
segment_ids = tf.placeholder(tf.int32, shape, 'segment_ids')
label_ids = tf.placeholder(tf.int32, (None), 'label_ids')
create_model(bert_config, False, input_ids, input_mask, segment_ids, label_ids,
num_labels, use_one_hot_embeddings)
tvars = tf.trainable_variables()
(assignment_map, initialized_variable_names) = modeling.get_assignment_map_from_checkpoint(tvars, init_checkpoint)
tf.train.init_from_checkpoint(init_checkpoint, assignment_map)
tf_sess.run(tf.global_variables_initializer())
print("LOADED!")
tf.compat.v1.logging.info("**** Trainable Variables ****")
for var in tvars:
init_string = ""
if var.name in initialized_variable_names:
init_string = ", *INIT_FROM_CKPT*"
else:
init_string = ", *NOTTTTTTTTTTTTTTTTTTTTT"
tf.compat.v1.logging.info(" name = %s, shape = %s%s", var.name, var.shape, init_string)
frozen_graph = tf.graph_util.convert_variables_to_constants(tf_sess,
tf_sess.graph.as_graph_def(), output_node_names)
num_nodes = len(frozen_graph.node)
print('Converting graph using TensorFlow-TensorRT...')
from tensorflow.python.compiler.tensorrt import trt_convert as trt
converter = trt.TrtGraphConverter(
input_graph_def=frozen_graph,
nodes_blacklist=output_node_names,
max_workspace_size_bytes=(4096 << 20) - 1000,
precision_mode = "FP16" if FLAGS.amp else "FP32",
minimum_segment_size=4,
is_dynamic_op=True,
maximum_cached_engines=1000
)
frozen_graph = converter.convert()
print('Total node count before and after TF-TRT conversion:',
num_nodes, '->', len(frozen_graph.node))
print('TRT node count:',
len([1 for n in frozen_graph.node if str(n.op) == 'TRTEngineOp']))
with tf.io.gfile.GFile("frozen_modelTRT.pb", "wb") as f:
f.write(frozen_graph.SerializeToString())
return frozen_graph
def model_fn_builder(task_name, bert_config, num_labels, init_checkpoint, learning_rate,
num_train_steps, num_warmup_steps,
use_one_hot_embeddings, hvd=None):
"""Returns `model_fn` closure for Estimator."""
def model_fn(features, labels, mode, params): # pylint: disable=unused-argument
"""The `model_fn` for Estimator."""
def metric_fn(per_example_loss, label_ids, logits):
predictions = tf.argmax(logits, axis=-1, output_type=tf.int32)
if task_name == "cola":
FN, FN_op = tf.metrics.false_negatives(labels=label_ids, predictions=predictions)
FP, FP_op = tf.metrics.false_positives(labels=label_ids, predictions=predictions)
TP, TP_op = tf.metrics.true_positives(labels=label_ids, predictions=predictions)
TN, TN_op = tf.metrics.true_negatives(labels=label_ids, predictions=predictions)
MCC = (TP * TN - FP * FN) / ((TP + FP) * (TP + FN) * (TN + FP) * (TN + FN)) ** 0.5
MCC_op = tf.group(FN_op, TN_op, TP_op, FP_op, tf.identity(MCC, name="MCC"))
return {"MCC": (MCC, MCC_op)}
elif task_name == "mrpc":
accuracy = tf.metrics.accuracy(
labels=label_ids, predictions=predictions)
loss = tf.metrics.mean(values=per_example_loss)
f1 = tf_metrics.f1(labels=label_ids, predictions=predictions, num_classes=2, pos_indices=[1])
return {
"eval_accuracy": accuracy,
"eval_f1": f1,
"eval_loss": loss,
}
else:
accuracy = tf.metrics.accuracy(
labels=label_ids, predictions=predictions)
loss = tf.metrics.mean(values=per_example_loss)
return {
"eval_accuracy": accuracy,
"eval_loss": loss,
}
tf.compat.v1.logging.info("*** Features ***")
tf.compat.v1.logging.info("*** Features ***")
for name in sorted(features.keys()):
tf.compat.v1.logging.info(" name = %s, shape = %s" % (name, features[name].shape))
input_ids = features["input_ids"]
input_mask = features["input_mask"]
segment_ids = features["segment_ids"]
label_ids = features["label_ids"]
is_training = (mode == tf.estimator.ModeKeys.TRAIN)
if not is_training and FLAGS.use_trt:
trt_graph = get_frozen_tftrt_model(bert_config, input_ids.shape, num_labels, use_one_hot_embeddings, init_checkpoint)
(total_loss, per_example_loss, logits, probabilities) = tf.import_graph_def(trt_graph,
input_map={'input_ids':input_ids, 'input_mask':input_mask, 'segment_ids':segment_ids, 'label_ids':label_ids},
return_elements=['loss/cls_loss:0', 'loss/cls_per_example_loss:0', 'loss/cls_logits:0', 'loss/cls_probabilities:0'],
name='')
if mode == tf.estimator.ModeKeys.PREDICT:
predictions = {"probabilities": probabilities}
output_spec = tf.estimator.EstimatorSpec(
mode=mode, predictions=predictions)
elif mode == tf.estimator.ModeKeys.EVAL:
eval_metric_ops = metric_fn(per_example_loss, label_ids, logits)
output_spec = tf.estimator.EstimatorSpec(
mode=mode,
loss=total_loss,
eval_metric_ops=eval_metric_ops)
return output_spec
(total_loss, per_example_loss, logits, probabilities) = create_model(
bert_config, is_training, input_ids, input_mask, segment_ids, label_ids,
num_labels, use_one_hot_embeddings)
tvars = tf.trainable_variables()
initialized_variable_names = {}
if init_checkpoint and (hvd is None or hvd.rank() == 0):
(assignment_map, initialized_variable_names
) = modeling.get_assignment_map_from_checkpoint(tvars, init_checkpoint)
tf.train.init_from_checkpoint(init_checkpoint, assignment_map)
if FLAGS.verbose_logging:
tf.compat.v1.logging.info("**** Trainable Variables ****")
for var in tvars:
init_string = ""
if var.name in initialized_variable_names:
init_string = ", *INIT_FROM_CKPT*"
tf.compat.v1.logging.info(" name = %s, shape = %s%s", var.name, var.shape,
init_string)
output_spec = None
if mode == tf.estimator.ModeKeys.TRAIN:
train_op = optimization.create_optimizer(
total_loss, learning_rate, num_train_steps, num_warmup_steps,
hvd, False, FLAGS.amp, FLAGS.num_accumulation_steps, FLAGS.optimizer_type)
output_spec = tf.estimator.EstimatorSpec(
mode=mode,
loss=total_loss,
train_op=train_op)
elif mode == tf.estimator.ModeKeys.EVAL:
dummy_op = tf.no_op()
# Need to call mixed precision graph rewrite if fp16 to enable graph rewrite
if FLAGS.amp:
loss_scaler = tf.train.experimental.FixedLossScale(1)
dummy_op = tf.train.experimental.enable_mixed_precision_graph_rewrite(
optimization.LAMBOptimizer(learning_rate=0.0), loss_scaler)
eval_metric_ops = metric_fn(per_example_loss, label_ids, logits)
output_spec = tf.estimator.EstimatorSpec(
mode=mode,
loss=total_loss,
eval_metric_ops=eval_metric_ops)
else:
dummy_op = tf.no_op()
# Need to call mixed precision graph rewrite if fp16 to enable graph rewrite
if FLAGS.amp:
dummy_op = tf.train.experimental.enable_mixed_precision_graph_rewrite(
optimization.LAMBOptimizer(learning_rate=0.0))
output_spec = tf.estimator.EstimatorSpec(
mode=mode, predictions=probabilities)
return output_spec
return model_fn
# This function is not used by this file but is still used by the Colab and
# people who depend on it.
def input_fn_builder(features, batch_size, seq_length, is_training, drop_remainder, hvd=None):
"""Creates an `input_fn` closure to be passed to Estimator."""
all_input_ids = []
all_input_mask = []
all_segment_ids = []
all_label_ids = []
for feature in features:
all_input_ids.append(feature.input_ids)
all_input_mask.append(feature.input_mask)
all_segment_ids.append(feature.segment_ids)
all_label_ids.append(feature.label_id)
def input_fn():
"""The actual input function."""
num_examples = len(features)
# This is for demo purposes and does NOT scale to large data sets. We do
# not use Dataset.from_generator() because that uses tf.py_func which is
# not TPU compatible. The right way to load data is with TFRecordReader.
d = tf.data.Dataset.from_tensor_slices({
"input_ids":
tf.constant(
all_input_ids, shape=[num_examples, seq_length],
dtype=tf.int32),
"input_mask":
tf.constant(
all_input_mask,
shape=[num_examples, seq_length],
dtype=tf.int32),
"segment_ids":
tf.constant(
all_segment_ids,
shape=[num_examples, seq_length],
dtype=tf.int32),
"label_ids":
tf.constant(all_label_ids, shape=[num_examples], dtype=tf.int32),
})
if is_training:
if hvd is not None: d = d.shard(hvd.size(), hvd.rank())
d = d.repeat()
d = d.shuffle(buffer_size=100)
d = d.batch(batch_size=batch_size, drop_remainder=drop_remainder)
return d
return input_fn
def main(_):
setup_xla_flags()
tf.compat.v1.logging.set_verbosity(tf.compat.v1.logging.INFO)
dllogging = utils.dllogger_class.dllogger_class(FLAGS.dllog_path)
if FLAGS.horovod:
hvd.init()
processors = {
"cola": ColaProcessor,
"mnli": MnliProcessor,
"mrpc": MrpcProcessor,
"xnli": XnliProcessor,
}
if not FLAGS.do_train and not FLAGS.do_eval and not FLAGS.do_predict:
raise ValueError(
"At least one of `do_train`, `do_eval` or `do_predict' must be True.")
bert_config = modeling.BertConfig.from_json_file(FLAGS.bert_config_file)
if FLAGS.max_seq_length > bert_config.max_position_embeddings:
raise ValueError(
"Cannot use sequence length %d because the BERT model "
"was only trained up to sequence length %d" %
(FLAGS.max_seq_length, bert_config.max_position_embeddings))
tf.io.gfile.makedirs(FLAGS.output_dir)
task_name = FLAGS.task_name.lower()
if task_name not in processors:
raise ValueError("Task not found: %s" % (task_name))
processor = processors[task_name]()
label_list = processor.get_labels()
tokenizer = tokenization.FullTokenizer(
vocab_file=FLAGS.vocab_file, do_lower_case=FLAGS.do_lower_case)
master_process = True
training_hooks = []
global_batch_size = FLAGS.train_batch_size * FLAGS.num_accumulation_steps
hvd_rank = 0
config = tf.compat.v1.ConfigProto()
if FLAGS.horovod:
tf.compat.v1.logging.info("Multi-GPU training with TF Horovod")
tf.compat.v1.logging.info("hvd.size() = %d hvd.rank() = %d", hvd.size(), hvd.rank())
global_batch_size = FLAGS.train_batch_size * FLAGS.num_accumulation_steps * hvd.size()
master_process = (hvd.rank() == 0)
hvd_rank = hvd.rank()
config.gpu_options.visible_device_list = str(hvd.local_rank())
set_affinity(hvd.local_rank())
if hvd.size() > 1:
training_hooks.append(hvd.BroadcastGlobalVariablesHook(0))
if FLAGS.use_xla:
config.graph_options.optimizer_options.global_jit_level = tf.compat.v1.OptimizerOptions.ON_1
if FLAGS.amp:
tf.enable_resource_variables()
run_config = tf.estimator.RunConfig(
model_dir=FLAGS.output_dir if master_process else None,
session_config=config,
save_checkpoints_steps=FLAGS.save_checkpoints_steps if master_process else None,
save_summary_steps=FLAGS.save_checkpoints_steps if master_process else None,
log_step_count_steps=FLAGS.display_loss_steps,
keep_checkpoint_max=1)
if master_process:
tf.compat.v1.logging.info("***** Configuaration *****")
for key in FLAGS.__flags.keys():
tf.compat.v1.logging.info(' {}: {}'.format(key, getattr(FLAGS, key)))
tf.compat.v1.logging.info("**************************")
train_examples = None
num_train_steps = None
num_warmup_steps = None
training_hooks.append(LogTrainRunHook(global_batch_size, hvd_rank, FLAGS.save_checkpoints_steps, num_steps_ignore_xla=25))
if FLAGS.do_train:
train_examples = processor.get_train_examples(FLAGS.data_dir)
num_train_steps = int(
len(train_examples) / global_batch_size * FLAGS.num_train_epochs)
num_warmup_steps = int(num_train_steps * FLAGS.warmup_proportion)
start_index = 0
end_index = len(train_examples)
tmp_filenames = [os.path.join(FLAGS.output_dir, "train.tf_record")]
if FLAGS.horovod:
tmp_filenames = [os.path.join(FLAGS.output_dir, "train.tf_record{}".format(i)) for i in range(hvd.size())]
num_examples_per_rank = len(train_examples) // hvd.size()
remainder = len(train_examples) % hvd.size()
if hvd.rank() < remainder:
start_index = hvd.rank() * (num_examples_per_rank+1)
end_index = start_index + num_examples_per_rank + 1
else:
start_index = hvd.rank() * num_examples_per_rank + remainder
end_index = start_index + (num_examples_per_rank)
model_fn = model_fn_builder(
task_name=task_name,
bert_config=bert_config,
num_labels=len(label_list),
init_checkpoint=FLAGS.init_checkpoint,
learning_rate=FLAGS.learning_rate if not FLAGS.horovod else FLAGS.learning_rate * hvd.size(),
num_train_steps=num_train_steps,
num_warmup_steps=num_warmup_steps,
use_one_hot_embeddings=False,
hvd=None if not FLAGS.horovod else hvd)
estimator = tf.estimator.Estimator(
model_fn=model_fn,
config=run_config)
if FLAGS.do_train:
file_based_convert_examples_to_features(
train_examples[start_index:end_index], label_list, FLAGS.max_seq_length, tokenizer, tmp_filenames[hvd_rank])
tf.compat.v1.logging.info("***** Running training *****")
tf.compat.v1.logging.info(" Num examples = %d", len(train_examples))
tf.compat.v1.logging.info(" Batch size = %d", FLAGS.train_batch_size)
tf.compat.v1.logging.info(" Num steps = %d", num_train_steps)
train_input_fn = file_based_input_fn_builder(
input_file=tmp_filenames,
batch_size=FLAGS.train_batch_size,
seq_length=FLAGS.max_seq_length,
is_training=True,
drop_remainder=True,
hvd=None if not FLAGS.horovod else hvd)
train_start_time = time.time()
estimator.train(input_fn=train_input_fn, max_steps=num_train_steps, hooks=training_hooks)
train_time_elapsed = time.time() - train_start_time
train_time_wo_overhead = training_hooks[-1].total_time
avg_sentences_per_second = num_train_steps * global_batch_size * 1.0 / train_time_elapsed
ss_sentences_per_second = (training_hooks[-1].count - training_hooks[-1].skipped) * global_batch_size * 1.0 / train_time_wo_overhead
if master_process:
tf.compat.v1.logging.info("-----------------------------")
tf.compat.v1.logging.info("Total Training Time = %0.2f for Sentences = %d", train_time_elapsed,
num_train_steps * global_batch_size)
tf.compat.v1.logging.info("Total Training Time W/O Overhead = %0.2f for Sentences = %d", train_time_wo_overhead,
(training_hooks[-1].count - training_hooks[-1].skipped) * global_batch_size)
tf.compat.v1.logging.info("Throughput Average (sentences/sec) with overhead = %0.2f", avg_sentences_per_second)
tf.compat.v1.logging.info("Throughput Average (sentences/sec) = %0.2f", ss_sentences_per_second)
tf.compat.v1.logging.info("-----------------------------")
if FLAGS.do_eval and master_process:
eval_examples = processor.get_dev_examples(FLAGS.data_dir)
eval_file = os.path.join(FLAGS.output_dir, "eval.tf_record")
file_based_convert_examples_to_features(
eval_examples, label_list, FLAGS.max_seq_length, tokenizer, eval_file)
tf.compat.v1.logging.info("***** Running evaluation *****")
tf.compat.v1.logging.info(" Num examples = %d", len(eval_examples))
tf.compat.v1.logging.info(" Batch size = %d", FLAGS.eval_batch_size)
eval_drop_remainder = False
eval_input_fn = file_based_input_fn_builder(
input_file=eval_file,
batch_size=FLAGS.eval_batch_size,
seq_length=FLAGS.max_seq_length,
is_training=False,
drop_remainder=eval_drop_remainder)
eval_hooks = [LogEvalRunHook(FLAGS.eval_batch_size)]
eval_start_time = time.time()
result = estimator.evaluate(input_fn=eval_input_fn, hooks=eval_hooks)
eval_time_elapsed = time.time() - eval_start_time
time_list = eval_hooks[-1].time_list
time_list.sort()
# Removing outliers (init/warmup) in throughput computation.
eval_time_wo_overhead = sum(time_list[:int(len(time_list) * 0.8)])
num_sentences = (int(len(time_list) * 0.8)) * FLAGS.eval_batch_size
avg = np.mean(time_list)
cf_50 = max(time_list[:int(len(time_list) * 0.50)])
cf_90 = max(time_list[:int(len(time_list) * 0.90)])
cf_95 = max(time_list[:int(len(time_list) * 0.95)])
cf_99 = max(time_list[:int(len(time_list) * 0.99)])
cf_100 = max(time_list[:int(len(time_list) * 1)])
ss_sentences_per_second = num_sentences * 1.0 / eval_time_wo_overhead
tf.compat.v1.logging.info("-----------------------------")
tf.compat.v1.logging.info("Total Inference Time = %0.2f for Sentences = %d", eval_time_elapsed,
eval_hooks[-1].count * FLAGS.eval_batch_size)
tf.compat.v1.logging.info("Total Inference Time W/O Overhead = %0.2f for Sentences = %d", eval_time_wo_overhead,
num_sentences)
tf.compat.v1.logging.info("Summary Inference Statistics on EVAL set")
tf.compat.v1.logging.info("Batch size = %d", FLAGS.eval_batch_size)
tf.compat.v1.logging.info("Sequence Length = %d", FLAGS.max_seq_length)
tf.compat.v1.logging.info("Precision = %s", "fp16" if FLAGS.amp else "fp32")
tf.compat.v1.logging.info("Latency Confidence Level 50 (ms) = %0.2f", cf_50 * 1000)
tf.compat.v1.logging.info("Latency Confidence Level 90 (ms) = %0.2f", cf_90 * 1000)
tf.compat.v1.logging.info("Latency Confidence Level 95 (ms) = %0.2f", cf_95 * 1000)
tf.compat.v1.logging.info("Latency Confidence Level 99 (ms) = %0.2f", cf_99 * 1000)
tf.compat.v1.logging.info("Latency Confidence Level 100 (ms) = %0.2f", cf_100 * 1000)
tf.compat.v1.logging.info("Latency Average (ms) = %0.2f", avg * 1000)
tf.compat.v1.logging.info("Throughput Average (sentences/sec) = %0.2f", ss_sentences_per_second)
dllogging.logger.log(step=(), data={"throughput_val": ss_sentences_per_second}, verbosity=Verbosity.DEFAULT)
tf.compat.v1.logging.info("-----------------------------")
output_eval_file = os.path.join(FLAGS.output_dir, "eval_results.txt")
with tf.io.gfile.GFile(output_eval_file, "w") as writer:
tf.compat.v1.logging.info("***** Eval results *****")
for key in sorted(result.keys()):
dllogging.logger.log(step=(), data={key: float(result[key])}, verbosity=Verbosity.DEFAULT)
tf.compat.v1.logging.info(" %s = %s", key, str(result[key]))
writer.write("%s = %s\n" % (key, str(result[key])))
if FLAGS.do_predict and master_process:
predict_examples = processor.get_test_examples(FLAGS.data_dir)
predict_file = os.path.join(FLAGS.output_dir, "predict.tf_record")
file_based_convert_examples_to_features(predict_examples, label_list,
FLAGS.max_seq_length, tokenizer,
predict_file)
tf.compat.v1.logging.info("***** Running prediction*****")
tf.compat.v1.logging.info(" Num examples = %d", len(predict_examples))
tf.compat.v1.logging.info(" Batch size = %d", FLAGS.predict_batch_size)
predict_drop_remainder = False
predict_input_fn = file_based_input_fn_builder(
input_file=predict_file,
batch_size=FLAGS.predict_batch_size,
seq_length=FLAGS.max_seq_length,
is_training=False,
drop_remainder=predict_drop_remainder)
predict_hooks = [LogEvalRunHook(FLAGS.predict_batch_size)]
predict_start_time = time.time()
output_predict_file = os.path.join(FLAGS.output_dir, "test_results.tsv")
with tf.io.gfile.GFile(output_predict_file, "w") as writer:
tf.compat.v1.logging.info("***** Predict results *****")
for prediction in estimator.predict(input_fn=predict_input_fn, hooks=predict_hooks,
yield_single_examples=False):
output_line = "\t".join(
str(class_probability) for class_probability in prediction) + "\n"
writer.write(output_line)
predict_time_elapsed = time.time() - predict_start_time
time_list = predict_hooks[-1].time_list
time_list.sort()
# Removing outliers (init/warmup) in throughput computation.
predict_time_wo_overhead = sum(time_list[:int(len(time_list) * 0.8)])
num_sentences = (int(len(time_list) * 0.8)) * FLAGS.predict_batch_size
avg = np.mean(time_list)
cf_50 = max(time_list[:int(len(time_list) * 0.50)])
cf_90 = max(time_list[:int(len(time_list) * 0.90)])
cf_95 = max(time_list[:int(len(time_list) * 0.95)])
cf_99 = max(time_list[:int(len(time_list) * 0.99)])
cf_100 = max(time_list[:int(len(time_list) * 1)])
ss_sentences_per_second = num_sentences * 1.0 / predict_time_wo_overhead
tf.compat.v1.logging.info("-----------------------------")
tf.compat.v1.logging.info("Total Inference Time = %0.2f for Sentences = %d", predict_time_elapsed,
predict_hooks[-1].count * FLAGS.predict_batch_size)
tf.compat.v1.logging.info("Total Inference Time W/O Overhead = %0.2f for Sentences = %d", predict_time_wo_overhead,
num_sentences)
tf.compat.v1.logging.info("Summary Inference Statistics on TEST SET")
tf.compat.v1.logging.info("Batch size = %d", FLAGS.predict_batch_size)
tf.compat.v1.logging.info("Sequence Length = %d", FLAGS.max_seq_length)
tf.compat.v1.logging.info("Precision = %s", "fp16" if FLAGS.amp else "fp32")
tf.compat.v1.logging.info("Latency Confidence Level 50 (ms) = %0.2f", cf_50 * 1000)
tf.compat.v1.logging.info("Latency Confidence Level 90 (ms) = %0.2f", cf_90 * 1000)
tf.compat.v1.logging.info("Latency Confidence Level 95 (ms) = %0.2f", cf_95 * 1000)
tf.compat.v1.logging.info("Latency Confidence Level 99 (ms) = %0.2f", cf_99 * 1000)
tf.compat.v1.logging.info("Latency Confidence Level 100 (ms) = %0.2f", cf_100 * 1000)
tf.compat.v1.logging.info("Latency Average (ms) = %0.2f", avg * 1000)
tf.compat.v1.logging.info("Throughput Average (sentences/sec) = %0.2f", ss_sentences_per_second)
dllogging.logger.log(step=(), data={"throughput_val": ss_sentences_per_second}, verbosity=Verbosity.DEFAULT)
tf.compat.v1.logging.info("-----------------------------")
if __name__ == "__main__":
flags.mark_flag_as_required("data_dir")
flags.mark_flag_as_required("task_name")
flags.mark_flag_as_required("vocab_file")
flags.mark_flag_as_required("bert_config_file")
flags.mark_flag_as_required("output_dir")
tf.compat.v1.app.run()